SRR1873285 Sample ID 2445

Data sources
Paper identifier Telese2015lrp8
SRP accession SRP056003
GEO accession GSE66703
Samples SRR1873285
Technical details
QC score 3
Replicate 1
Protocol GRO-seq
Library prep circularization
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 141 Mb
Stranded gene read counts TXT file 926 Kb
Unstranded bidirectional read counts TXT file 17 Mb
Tfit bidirectional regions BED file 2 Mb
dREG bidirectional regions BED file 907 Kb
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type primary cell
Cell type cortical neuron
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment reelin (10 nM) -1 hr 0 hr 1 hr
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes Ran qc redo nextflow
Sample metrics
Sample QC score 3
Sample NRO score 1
Raw read length 50
Read depth after trimming 83,704,508
Duplication proportion 0.65468
Proportion reads mapped 0.726
Exon/intron ratio 2.44274
Unique read proportion 0.52468
Bidirectionals
Total # Tfit bidirectionals 20536
# Promoter Tfit bidirectionals 8060
# Intronic Tfit bidirectionals 7294
# Intergenic Tfit bidirectionals 2752
Total # dREG bidirectionals 21034
# Promoter dREG bidirectionals 6941
# Intronic dREG bidirectionals 8352
# Intergenic dREG bidirectionals 4204
Part of Tfit master merge? True
Part of dREG master merge? True