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SRR1873285 Sample ID 2445
| Paper identifier | Telese2015lrp8 |
| SRP accession | SRP056003 |
| GEO accession | GSE66703 |
| Samples | SRR1873285 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 141 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 907 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | cortical neuron |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | reelin (10 nM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 83,704,508 |
| Duplication proportion | 0.65468 |
| Proportion reads mapped | 0.726 |
| Exon/intron ratio | 2.44274 |
| Unique read proportion | 0.52468 |
| Total # Tfit bidirectionals | 20536 |
| # Promoter Tfit bidirectionals | 8060 |
| # Intronic Tfit bidirectionals | 7294 |
| # Intergenic Tfit bidirectionals | 2752 |
| Total # dREG bidirectionals | 21034 |
| # Promoter dREG bidirectionals | 6941 |
| # Intronic dREG bidirectionals | 8352 |
| # Intergenic dREG bidirectionals | 4204 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |