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SRR1873285 Sample ID 2445
Paper identifier | Telese2015lrp8 |
SRP accession | SRP056003 |
GEO accession | GSE66703 |
Samples | SRR1873285 |
QC score | 3 |
Replicate | 1 |
Protocol | GRO-seq |
Library prep | circularization |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | forward |
Reverse complemented? | False |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 141 Mb |
Stranded gene read counts | TXT file | 926 Kb |
Unstranded bidirectional read counts | TXT file | 17 Mb |
Tfit bidirectional regions | BED file | 2 Mb |
dREG bidirectional regions | BED file | 907 Kb |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | primary cell |
Cell type | cortical neuron |
Clone/Individual | |
Strain | |
Genotype | |
Construct |
Condition type | Treatment | Start time | End time | Duration |
treatment | reelin (10 nM) | -1 hr | 0 hr | 1 hr |
Pipeline info and software versions | |
Sample notes | |
Analysis notes | Ran qc redo nextflow |
Sample QC score | 3 |
Sample NRO score | 1 |
Raw read length | 50 |
Read depth after trimming | 83,704,508 |
Duplication proportion | 0.65468 |
Proportion reads mapped | 0.726 |
Exon/intron ratio | 2.44274 |
Unique read proportion | 0.52468 |
Total # Tfit bidirectionals | 20536 |
# Promoter Tfit bidirectionals | 8060 |
# Intronic Tfit bidirectionals | 7294 |
# Intergenic Tfit bidirectionals | 2752 |
Total # dREG bidirectionals | 21034 |
# Promoter dREG bidirectionals | 6941 |
# Intronic dREG bidirectionals | 8352 |
# Intergenic dREG bidirectionals | 4204 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |