DBNascent | Samples

SRR1916554 Sample ID 663

**Data sources**
Paper identifier	Elkon2015myc
SRP	SRP056201
Samples	SRR1916554

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	155 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	U2OS
Clone/Individual
Strain
Genotype	dox-inducible Myc (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	water	-5 hr	0 hr	5 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Poor methods: assuming "mock treatment" means water and that the construct is stably integrated, but neither explicitly stated
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	100,896,527
Duplication proportion	0.76731
Proportion reads mapped	0.9615
Exon/intron ratio	1.60399
Unique read proportion	0.37537

**Bidirectionals**
Total # Tfit bidirectionals	45682
# Promoter Tfit bidirectionals	13700
# Intronic Tfit bidirectionals	19068
# Intergenic Tfit bidirectionals	11859
Total # dREG bidirectionals	31505
# Promoter dREG bidirectionals	8674
# Intronic dREG bidirectionals	12293
# Intergenic dREG bidirectionals	10011
Part of Tfit master merge?	True
Part of dREG master merge?	True