DBNascent | Samples

SRR1951426 Sample ID 943

**Data sources**
Paper identifier	Heinaniemi2016transcription
SRP accession	SRP056832
GEO accession	GSE67540
Samples	SRR1951426

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	44 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	371 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Nalm6
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Nalm6 (ACC-128) is ALL leukemia cell line
Analysis notes	Originally downloaded/processed many samples also present in Teppo2016genome - final versions under that ID; Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	11,433,352
Duplication proportion	0.47101
Proportion reads mapped	0.9531
Exon/intron ratio	3.09855
Unique read proportion	0.53457

**Bidirectionals**
Total # Tfit bidirectionals	13907
# Promoter Tfit bidirectionals	5285
# Intronic Tfit bidirectionals	5995
# Intergenic Tfit bidirectionals	2263
Total # dREG bidirectionals	8616
# Promoter dREG bidirectionals	4318
# Intronic dREG bidirectionals	2817
# Intergenic dREG bidirectionals	1463
Part of Tfit master merge?	True
Part of dREG master merge?	True