DBNascent | Samples

SRR1951427 Sample ID 944

**Data sources**
Paper identifier	Heinaniemi2016transcription
SRP	SRP056832
Samples	SRR1951427

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	371 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Nalm6
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	stromal cell co-culture	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	Nalm6 (ACC-128) is ALL leukemia cell line
Analysis notes	Originally downloaded/processed many samples also present in Teppo2016genome - final versions under that ID; Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	10,497,325
Duplication proportion	0.40433
Proportion reads mapped	0.9396
Exon/intron ratio	2.60632
Unique read proportion	0.59263

**Bidirectionals**
Total # Tfit bidirectionals	14259
# Promoter Tfit bidirectionals	4662
# Intronic Tfit bidirectionals	6564
# Intergenic Tfit bidirectionals	2647
Total # dREG bidirectionals	8626
# Promoter dREG bidirectionals	3889
# Intronic dREG bidirectionals	3075
# Intergenic dREG bidirectionals	1672
Part of Tfit master merge?	True
Part of dREG master merge?	True