DBNascent | Samples

SRR1951434 Sample ID 946

**Data sources**
Paper identifier	Heinaniemi2016transcription
SRP accession	SRP056832
GEO accession	GSE67540
Samples	SRR1951434

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	59 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	513 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	REH
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	stromal cell co-culture	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	REH (ACC-20) cell line is ALL leukemia cell line
Analysis notes	Originally downloaded/processed many samples also present in Teppo2016genome - final versions under that ID; Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	16,788,561
Duplication proportion	0.47036
Proportion reads mapped	0.9291
Exon/intron ratio	3.22619
Unique read proportion	0.56956

**Bidirectionals**
Total # Tfit bidirectionals	17690
# Promoter Tfit bidirectionals	6543
# Intronic Tfit bidirectionals	7386
# Intergenic Tfit bidirectionals	3165
Total # dREG bidirectionals	11911
# Promoter dREG bidirectionals	5389
# Intronic dREG bidirectionals	4314
# Intergenic dREG bidirectionals	2273
Part of Tfit master merge?	True
Part of dREG master merge?	True