DBNascent | Samples

SRR1951435 Sample ID 947

**Data sources**
Paper identifier	Heinaniemi2016transcription
SRP	SRP056832
Samples	SRR1951435

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	374 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	REH
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	stromal cell co-culture	-48 hr	0 hr	2 day

**Extended notes**
Pipeline info and software versions
Sample notes	REH (ACC-20) cell line is ALL leukemia cell line
Analysis notes	Originally downloaded/processed many samples also present in Teppo2016genome - final versions under that ID; Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	11,102,093
Duplication proportion	0.42283
Proportion reads mapped	0.9454
Exon/intron ratio	3.18338
Unique read proportion	0.58028

**Bidirectionals**
Total # Tfit bidirectionals	14293
# Promoter Tfit bidirectionals	5945
# Intronic Tfit bidirectionals	5720
# Intergenic Tfit bidirectionals	2089
Total # dREG bidirectionals	8702
# Promoter dREG bidirectionals	4680
# Intronic dREG bidirectionals	2778
# Intergenic dREG bidirectionals	1308
Part of Tfit master merge?	True
Part of dREG master merge?	True