DBNascent | Samples

SRR1951436 Sample ID 948

**Data sources**
Paper identifier	Heinaniemi2016transcription
SRP accession	SRP056832
GEO accession	GSE67540
Samples	SRR1951436

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	40 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	272 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	REH
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	differentiated (A)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	REH (ACC-20) cell line is ALL leukemia cell line
Analysis notes	Originally downloaded/processed many samples also present in Teppo2016genome - final versions under that ID; Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	9,549,116
Duplication proportion	0.41692
Proportion reads mapped	0.9511
Exon/intron ratio	3.60279
Unique read proportion	0.57718

**Bidirectionals**
Total # Tfit bidirectionals	12123
# Promoter Tfit bidirectionals	4985
# Intronic Tfit bidirectionals	5089
# Intergenic Tfit bidirectionals	1544
Total # dREG bidirectionals	6339
# Promoter dREG bidirectionals	3355
# Intronic dREG bidirectionals	2012
# Intergenic dREG bidirectionals	941
Part of Tfit master merge?	True
Part of dREG master merge?	True