DBNascent | Samples

SRR1991266 Sample ID 2298

**Data sources**
Paper identifier	Sigova2015transcription
SRP	SRP057598
Samples	SRR1991266

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	66 Mb
Stranded gene read counts	TXT file	918 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	900 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	46,843,266
Duplication proportion	0.50436
Proportion reads mapped	0.4012
Exon/intron ratio	2.62025
Unique read proportion	0.56852

**Bidirectionals**
Total # Tfit bidirectionals	33345
# Promoter Tfit bidirectionals	11056
# Intronic Tfit bidirectionals	9612
# Intergenic Tfit bidirectionals	8515
Total # dREG bidirectionals	20875
# Promoter dREG bidirectionals	7669
# Intronic dREG bidirectionals	5255
# Intergenic dREG bidirectionals	5956
Part of Tfit master merge?	True
Part of dREG master merge?	True