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SRR1991267 Sample ID 2300
| Paper identifier | Sigova2015transcription |
| SRP accession | SRP057598 |
| GEO accession | GSE68197 |
| Samples | SRR1991267 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 14 Mb |
| Stranded gene read counts | TXT file | 895 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 40 Kb |
| dREG bidirectional regions | BED file | 21 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | |
| Genotype | BirA knock-in |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Major poly-A contamination; Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 40 |
| Read depth after trimming | 16,918,036 |
| Duplication proportion | 0.85788 |
| Proportion reads mapped | 0.4024 |
| Exon/intron ratio | 0.99608 |
| Unique read proportion | 0.12429 |
| Total # Tfit bidirectionals | 469 |
| # Promoter Tfit bidirectionals | 181 |
| # Intronic Tfit bidirectionals | 189 |
| # Intergenic Tfit bidirectionals | 85 |
| Total # dREG bidirectionals | 498 |
| # Promoter dREG bidirectionals | 126 |
| # Intronic dREG bidirectionals | 120 |
| # Intergenic dREG bidirectionals | 232 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |