DBNascent | Samples

SRR2059423 Sample ID 2756

**Data sources**
Paper identifier	Zhang2016regulation
SRP accession	SRP059339
GEO accession	GSE69757
Samples	SRR2059423

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	42 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	404 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	48
Read depth after trimming	56,213,146
Duplication proportion	0.71116
Proportion reads mapped	0.3025
Exon/intron ratio	4.66055
Unique read proportion	0.31663

**Bidirectionals**
Total # Tfit bidirectionals	13572
# Promoter Tfit bidirectionals	6460
# Intronic Tfit bidirectionals	5485
# Intergenic Tfit bidirectionals	1453
Total # dREG bidirectionals	9391
# Promoter dREG bidirectionals	5770
# Intronic dREG bidirectionals	2730
# Intergenic dREG bidirectionals	1049
Part of Tfit master merge?	True
Part of dREG master merge?	True