DBNascent | Samples

SRR2059424 Sample ID 2756

**Data sources**
Paper identifier	Zhang2016regulation
SRP	SRP059339
Samples	SRR2059424

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	97 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	947 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct	siRNA Yy1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	3
Raw read length	48
Read depth after trimming	85,232,771
Duplication proportion	0.69737
Proportion reads mapped	0.5014
Exon/intron ratio	5.64384
Unique read proportion	0.39566

**Bidirectionals**
Total # Tfit bidirectionals	29241
# Promoter Tfit bidirectionals	13644
# Intronic Tfit bidirectionals	11898
# Intergenic Tfit bidirectionals	3960
Total # dREG bidirectionals	21591
# Promoter dREG bidirectionals	8558
# Intronic dREG bidirectionals	8384
# Intergenic dREG bidirectionals	3608
Part of Tfit master merge?	True
Part of dREG master merge?	True