DBNascent | Samples

SRR2084592 Sample ID 430

**Data sources**
Paper identifier	Chen2015paf1
SRP accession	SRP060227
GEO accession	GSE70408
Samples	SRR2084592

**Technical details**
QC score	1
Replicate	1
Protocol	RNA-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	193 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct	shRNA Paf1

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	ChrRNA-Seq
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	51
Read depth after trimming	60,385,567
Duplication proportion	0.45601
Proportion reads mapped	0.9393
Exon/intron ratio	5.9645
Unique read proportion	0.76755

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	True
Part of dREG master merge?	True