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SRR2084592 Sample ID 430
| Paper identifier | Chen2015paf1 |
| SRP accession | SRP060227 |
| GEO accession | GSE70408 |
| Samples | SRR2084592 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | RNA-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 193 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HCT116 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | shRNA Paf1 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | ChrRNA-Seq |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 51 |
| Read depth after trimming | 60,385,567 |
| Duplication proportion | 0.45601 |
| Proportion reads mapped | 0.9393 |
| Exon/intron ratio | 5.9645 |
| Unique read proportion | 0.76755 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |