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SRR2129946 Sample ID 2745
| Paper identifier | Yu2015panoramix |
| SRP accession | SRP061628 |
| GEO accession | GSE71369 |
| Samples | SRR2129946 |
| QC score | 5 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 9 Mb |
| Stranded gene read counts | TXT file | 697 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | tissue |
| Cell type | ovary |
| Clone/Individual | |
| Strain | |
| Genotype | luciferase knock-in |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Library prep not explicitly stated but refers to Huppertz et al 2014 Methods, which is circularization |
| Analysis notes | dirty data - did fastq-dump manually, force trimmed first 15 bp and bp 45+ prior to running pipeline, ran pipeline on trimmed fastqs (with normal bbduk trimming included); a few samples sparse due to low read depth |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 10 |
| Read depth after trimming | 457,270 |
| Duplication proportion | 0.45385 |
| Proportion reads mapped | 0.699 |
| Exon/intron ratio | 1.40404 |
| Unique read proportion | 0.08326 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |