DBNascent | Samples

SRR2132598 Sample ID 45

**Data sources**
Paper identifier	Alhusini2017genomewide
SRP accession	SRP061498
GEO accession	GSE71624
Samples	SRR2132598

**Technical details**
QC score	5
Replicate	3
Protocol	GRO-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	S. cerevisiae
Sample type	organism
Cell type	whole yeast
Clone/Individual
Strain	clp1-769-5
Genotype	temperature-dependent Clp1 mut
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	permissive temperature (25 Celsius)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Not quite sure about library prep method - kit not well documented
Analysis notes

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	15
Read depth after trimming	141,861,169
Duplication proportion	0.95992
Proportion reads mapped	0.8891
Exon/intron ratio	0.60657
Unique read proportion	0.14623

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False