Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR2132613 Sample ID 50
| Paper identifier | Alhusini2017genomewide |
| SRP accession | SRP061498 |
| GEO accession | GSE71624 |
| Samples | SRR2132613 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 19 Mb |
| Organism | S. cerevisiae |
| Sample type | organism |
| Cell type | whole yeast |
| Clone/Individual | |
| Strain | BY4733 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | non-permissive temperature (37 Celsius) | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | Not quite sure about library prep method - kit not well documented |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 15 |
| Read depth after trimming | 30,652,115 |
| Duplication proportion | 0.87578 |
| Proportion reads mapped | 0.4146 |
| Exon/intron ratio | 0.3588 |
| Unique read proportion | 0.13389 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |