DBNascent | Samples

SRR2144179 Sample ID 1778

**Data sources**
Paper identifier	Mahat2016mammalian
SRP accession	SRP062019
GEO accession	GSE71708
Samples	SRR2144179

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	659 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	32
Read depth after trimming	28,102,230
Duplication proportion	0.4966
Proportion reads mapped	0.5607
Exon/intron ratio	3.41538
Unique read proportion	0.56723

**Bidirectionals**
Total # Tfit bidirectionals	24372
# Promoter Tfit bidirectionals	8473
# Intronic Tfit bidirectionals	8893
# Intergenic Tfit bidirectionals	4536
Total # dREG bidirectionals	15214
# Promoter dREG bidirectionals	6525
# Intronic dREG bidirectionals	4671
# Intergenic dREG bidirectionals	2649
Part of Tfit master merge?	True
Part of dREG master merge?	True