DBNascent | Samples

SRR2144184 Sample ID 1783

**Data sources**
Paper identifier	Mahat2016mammalian
SRP accession	SRP062019
GEO accession	GSE71708
Samples	SRR2144184

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	79 Mb
Stranded gene read counts	TXT file	920 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	35
Read depth after trimming	48,868,612
Duplication proportion	0.62659
Proportion reads mapped	0.5872
Exon/intron ratio	3.73762
Unique read proportion	0.52344

**Bidirectionals**
Total # Tfit bidirectionals	34070
# Promoter Tfit bidirectionals	9680
# Intronic Tfit bidirectionals	13222
# Intergenic Tfit bidirectionals	8179
Total # dREG bidirectionals	25294
# Promoter dREG bidirectionals	7370
# Intronic dREG bidirectionals	9582
# Intergenic dREG bidirectionals	5953
Part of Tfit master merge?	True
Part of dREG master merge?	True