Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR2144192 Sample ID 1791
| Paper identifier | Mahat2016mammalian |
| SRP accession | SRP062019 |
| GEO accession | GSE71708 |
| Samples | SRR2144192 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 54 Mb |
| Stranded gene read counts | TXT file | 913 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MEF |
| Clone/Individual | |
| Strain | |
| Genotype | Hsf1 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | heat shock (42 Celsius) | -60 min | 0 min | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 32 |
| Read depth after trimming | 16,635,127 |
| Duplication proportion | 0.36601 |
| Proportion reads mapped | 0.756 |
| Exon/intron ratio | 3.7655 |
| Unique read proportion | 0.64804 |
| Total # Tfit bidirectionals | 33855 |
| # Promoter Tfit bidirectionals | 10663 |
| # Intronic Tfit bidirectionals | 12756 |
| # Intergenic Tfit bidirectionals | 8398 |
| Total # dREG bidirectionals | 26678 |
| # Promoter dREG bidirectionals | 7480 |
| # Intronic dREG bidirectionals | 10490 |
| # Intergenic dREG bidirectionals | 6584 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |