SRR2144196 Sample ID 1795

Data sources
Paper identifier Mahat2016mammalian
SRP accession SRP062019
GEO accession GSE71708
Samples SRR2144196
Technical details
QC score 1
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 62 Mb
Stranded gene read counts TXT file 915 Kb
Unstranded bidirectional read counts TXT file 17 Mb
Tfit bidirectional regions BED file 2 Mb
dREG bidirectional regions BED file 727 Kb
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type cell line
Cell type MEF
Clone/Individual
Strain
Genotype Hsf1 -/-; Hsf2 -/-
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment heat shock (42 Celsius) -150 s 0 s 150 s
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 1
Sample NRO score 2
Raw read length 51
Read depth after trimming 23,851,571
Duplication proportion 0.45977
Proportion reads mapped 0.7155
Exon/intron ratio 4.09444
Unique read proportion 0.59334
Bidirectionals
Total # Tfit bidirectionals 25366
# Promoter Tfit bidirectionals 10750
# Intronic Tfit bidirectionals 8451
# Intergenic Tfit bidirectionals 3949
Total # dREG bidirectionals 16697
# Promoter dREG bidirectionals 6707
# Intronic dREG bidirectionals 5323
# Intergenic dREG bidirectionals 2878
Part of Tfit master merge? True
Part of dREG master merge? True