SRR2144200 Sample ID 1799

Data sources
Paper identifier Mahat2016mammalian
SRP accession SRP062019
GEO accession GSE71708
Samples SRR2144200
Technical details
QC score 1
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse True
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 161 Mb
Stranded gene read counts TXT file 926 Kb
Unstranded bidirectional read counts TXT file 17 Mb
Tfit bidirectional regions BED file 3 Mb
dREG bidirectional regions BED file 1 Mb
All data files ZIP archive
Cellular details
Organism M. musculus
Sample type cell line
Cell type MEF
Clone/Individual
Strain
Genotype Hsf1 -/-; Hsf2 -/-
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment heat shock (42 Celsius) -60 min 0 min 1 hr
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 1
Sample NRO score 2
Raw read length 32
Read depth after trimming 64,648,445
Duplication proportion 0.45183
Proportion reads mapped 0.7246
Exon/intron ratio 4.26568
Unique read proportion 0.67659
Bidirectionals
Total # Tfit bidirectionals 37460
# Promoter Tfit bidirectionals 13699
# Intronic Tfit bidirectionals 11439
# Intergenic Tfit bidirectionals 9829
Total # dREG bidirectionals 34200
# Promoter dREG bidirectionals 5852
# Intronic dREG bidirectionals 15034
# Intergenic dREG bidirectionals 9621
Part of Tfit master merge? True
Part of dREG master merge? True