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SRR2144200 Sample ID 1799
Paper identifier | Mahat2016mammalian |
SRP accession | SRP062019 |
GEO accession | GSE71708 |
Samples | SRR2144200 |
QC score | 1 |
Replicate | 1 |
Protocol | PRO-seq |
Library prep | ligation |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | reverse |
Reverse complemented? | True |
Mapped strandedness | forward |
Timecourse | True |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 161 Mb |
Stranded gene read counts | TXT file | 926 Kb |
Unstranded bidirectional read counts | TXT file | 17 Mb |
Tfit bidirectional regions | BED file | 3 Mb |
dREG bidirectional regions | BED file | 1 Mb |
All data files | ZIP archive |
Organism | M. musculus |
Sample type | cell line |
Cell type | MEF |
Clone/Individual | |
Strain | |
Genotype | Hsf1 -/-; Hsf2 -/- |
Construct |
Condition type | Treatment | Start time | End time | Duration |
treatment | heat shock (42 Celsius) | -60 min | 0 min | 1 hr |
Pipeline info and software versions | |
Sample notes | |
Analysis notes |
Sample QC score | 1 |
Sample NRO score | 2 |
Raw read length | 32 |
Read depth after trimming | 64,648,445 |
Duplication proportion | 0.45183 |
Proportion reads mapped | 0.7246 |
Exon/intron ratio | 4.26568 |
Unique read proportion | 0.67659 |
Total # Tfit bidirectionals | 37460 |
# Promoter Tfit bidirectionals | 13699 |
# Intronic Tfit bidirectionals | 11439 |
# Intergenic Tfit bidirectionals | 9829 |
Total # dREG bidirectionals | 34200 |
# Promoter dREG bidirectionals | 5852 |
# Intronic dREG bidirectionals | 15034 |
# Intergenic dREG bidirectionals | 9621 |
Part of Tfit master merge? | True |
Part of dREG master merge? | True |