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SRR2153508 Sample ID 2131
| Paper identifier | Salony2016akt |
| SRP accession | SRP062229 |
| GEO accession | GSE71898 |
| Samples | SRR2153508 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 29 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 113 Kb |
| dREG bidirectional regions | BED file | 91 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | AKTi-1/2 (2 microM) | -72 hr | 0 hr | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 5 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 93,416,741 |
| Duplication proportion | 0.95591 |
| Proportion reads mapped | 0.5326 |
| Exon/intron ratio | 1.71421 |
| Unique read proportion | 0.11308 |
| Total # Tfit bidirectionals | 1336 |
| # Promoter Tfit bidirectionals | 262 |
| # Intronic Tfit bidirectionals | 843 |
| # Intergenic Tfit bidirectionals | 116 |
| Total # dREG bidirectionals | 2116 |
| # Promoter dREG bidirectionals | 80 |
| # Intronic dREG bidirectionals | 1518 |
| # Intergenic dREG bidirectionals | 258 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |