DBNascent | Samples

SRR2153511 Sample ID 2133

**Data sources**
Paper identifier	Salony2016akt
SRP	SRP062229
Samples	SRR2153511

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	31 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	104 Kb
dREG bidirectional regions	BED file	193 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-72 hr	0 hr	3 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	5
Raw read length	50
Read depth after trimming	89,759,559
Duplication proportion	0.96511
Proportion reads mapped	0.7412
Exon/intron ratio	1.73398
Unique read proportion	0.15245

**Bidirectionals**
Total # Tfit bidirectionals	1227
# Promoter Tfit bidirectionals	128
# Intronic Tfit bidirectionals	890
# Intergenic Tfit bidirectionals	123
Total # dREG bidirectionals	4499
# Promoter dREG bidirectionals	68
# Intronic dREG bidirectionals	3545
# Intergenic dREG bidirectionals	492
Part of Tfit master merge?	True
Part of dREG master merge?	True