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SRR2153513 Sample ID 2136
| Paper identifier | Salony2016akt |
| SRP accession | SRP062229 |
| GEO accession | GSE71898 |
| Samples | SRR2153513 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 44 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 257 Kb |
| dREG bidirectional regions | BED file | 474 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HCT116 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | AKTi-1/2 (20 microM) | -72 hr | 0 hr | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 5 |
| Raw read length | 50 |
| Read depth after trimming | 91,451,663 |
| Duplication proportion | 0.92976 |
| Proportion reads mapped | 0.6452 |
| Exon/intron ratio | 1.67594 |
| Unique read proportion | 0.24695 |
| Total # Tfit bidirectionals | 3027 |
| # Promoter Tfit bidirectionals | 204 |
| # Intronic Tfit bidirectionals | 2135 |
| # Intergenic Tfit bidirectionals | 357 |
| Total # dREG bidirectionals | 11034 |
| # Promoter dREG bidirectionals | 145 |
| # Intronic dREG bidirectionals | 8401 |
| # Intergenic dREG bidirectionals | 1512 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |