DBNascent | Samples

SRR2432159 Sample ID 1189

**Data sources**
Paper identifier	Kantidakis2016mutation
SRP accession	SRP063847
GEO accession	GSE73126
Samples	SRR2432159

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	140 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain
Genotype	Mll2 fl/fl; tamoxifen-inducible Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	5
Raw read length	51
Read depth after trimming	52,616,341
Duplication proportion	0.45961
Proportion reads mapped	0.8161
Exon/intron ratio	12.6184
Unique read proportion	0.69125

**Bidirectionals**
Total # Tfit bidirectionals	31192
# Promoter Tfit bidirectionals	7278
# Intronic Tfit bidirectionals	13073
# Intergenic Tfit bidirectionals	4755
Total # dREG bidirectionals	24223
# Promoter dREG bidirectionals	4384
# Intronic dREG bidirectionals	10223
# Intergenic dREG bidirectionals	5151
Part of Tfit master merge?	True
Part of dREG master merge?	True