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SRR2432160 Sample ID 1190
| Paper identifier | Kantidakis2016mutation |
| SRP accession | SRP063847 |
| GEO accession | GSE73126 |
| Samples | SRR2432160 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 141 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 965 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MEF |
| Clone/Individual | |
| Strain | |
| Genotype | Mll2 fl/fl; tamoxifen-inducible Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hydroxytamoxifen (1 microM) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | when cells were treated with tamoxifen for 24 h, it resulted in the complete excision of MLL2 exons 3 to 5 |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 5 |
| Raw read length | 51 |
| Read depth after trimming | 51,845,090 |
| Duplication proportion | 0.45297 |
| Proportion reads mapped | 0.8156 |
| Exon/intron ratio | 11.2938 |
| Unique read proportion | 0.69891 |
| Total # Tfit bidirectionals | 28403 |
| # Promoter Tfit bidirectionals | 6991 |
| # Intronic Tfit bidirectionals | 11901 |
| # Intergenic Tfit bidirectionals | 3813 |
| Total # dREG bidirectionals | 22060 |
| # Promoter dREG bidirectionals | 4324 |
| # Intronic dREG bidirectionals | 9305 |
| # Intergenic dREG bidirectionals | 4457 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |