DBNascent | Samples

SRR2518187 Sample ID 2386

**Data sources**
Paper identifier	Strikoudis2016regulation
SRP	SRP064201
Samples	SRR2518187

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	34 Mb
Stranded gene read counts	TXT file	909 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	327 Kb
dREG bidirectional regions	BED file	123 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	KH2
Strain	C57BL/6 x 129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	LIF (1000 U/mL)	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	LIF treatment maintains pluripotency
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	27,642,628
Duplication proportion	0.7942
Proportion reads mapped	0.7842
Exon/intron ratio	3.31832
Unique read proportion	0.21973

**Bidirectionals**
Total # Tfit bidirectionals	3824
# Promoter Tfit bidirectionals	746
# Intronic Tfit bidirectionals	1502
# Intergenic Tfit bidirectionals	435
Total # dREG bidirectionals	2866
# Promoter dREG bidirectionals	523
# Intronic dREG bidirectionals	936
# Intergenic dREG bidirectionals	1072
Part of Tfit master merge?	False
Part of dREG master merge?	False