DBNascent | Samples

SRR2518189 Sample ID 2388

**Data sources**
Paper identifier	Strikoudis2016regulation
SRP	SRP064201
Samples	SRR2518189

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	32 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	311 Kb
dREG bidirectional regions	BED file	109 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	KH2
Strain	C57BL/6 x 129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	LIF (1000 U/mL)	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	LIF treatment maintains pluripotency
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	25,780,162
Duplication proportion	0.80275
Proportion reads mapped	0.8025
Exon/intron ratio	3.25854
Unique read proportion	0.20852

**Bidirectionals**
Total # Tfit bidirectionals	3643
# Promoter Tfit bidirectionals	717
# Intronic Tfit bidirectionals	1424
# Intergenic Tfit bidirectionals	394
Total # dREG bidirectionals	2545
# Promoter dREG bidirectionals	486
# Intronic dREG bidirectionals	787
# Intergenic dREG bidirectionals	982
Part of Tfit master merge?	False
Part of dREG master merge?	False