DBNascent | Samples

SRR2518191 Sample ID 2391

**Data sources**
Paper identifier	Strikoudis2016regulation
SRP accession	SRP064201
GEO accession	GSE73441
Samples	SRR2518191

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	33 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	349 Kb
dREG bidirectional regions	BED file	114 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	KH2
Strain	C57BL/6 x 129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Lack of LIF induces differentiation
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	22,234,272
Duplication proportion	0.76042
Proportion reads mapped	0.7938
Exon/intron ratio	3.82098
Unique read proportion	0.25175

**Bidirectionals**
Total # Tfit bidirectionals	4073
# Promoter Tfit bidirectionals	817
# Intronic Tfit bidirectionals	1529
# Intergenic Tfit bidirectionals	402
Total # dREG bidirectionals	2658
# Promoter dREG bidirectionals	491
# Intronic dREG bidirectionals	918
# Intergenic dREG bidirectionals	918
Part of Tfit master merge?	False
Part of dREG master merge?	False