DBNascent | Samples

SRR2518192 Sample ID 2391

**Data sources**
Paper identifier	Strikoudis2016regulation
SRP	SRP064201
Samples	SRR2518192

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	911 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	428 Kb
dREG bidirectional regions	BED file	149 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	KH2
Strain	C57BL/6 x 129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Lack of LIF induces differentiation
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	26,560,831
Duplication proportion	0.7303
Proportion reads mapped	0.7998
Exon/intron ratio	3.43239
Unique read proportion	0.28626

**Bidirectionals**
Total # Tfit bidirectionals	5009
# Promoter Tfit bidirectionals	1175
# Intronic Tfit bidirectionals	1965
# Intergenic Tfit bidirectionals	552
Total # dREG bidirectionals	3467
# Promoter dREG bidirectionals	757
# Intronic dREG bidirectionals	1144
# Intergenic dREG bidirectionals	1141
Part of Tfit master merge?	False
Part of dREG master merge?	False