DBNascent | Samples

SRR2518193 Sample ID 2392

**Data sources**
Paper identifier	Strikoudis2016regulation
SRP	SRP064201
Samples	SRR2518193

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	20 Mb
Stranded gene read counts	TXT file	899 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	318 Kb
dREG bidirectional regions	BED file	90 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	KH2
Strain	C57BL/6 x 129/Sv
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	LIF (1000 U/mL)	None	None	None
treatment	flavopiridol (300 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	LIF treatment maintains pluripotency
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	25,855,779
Duplication proportion	0.89819
Proportion reads mapped	0.766
Exon/intron ratio	3.77124
Unique read proportion	0.10922

**Bidirectionals**
Total # Tfit bidirectionals	3747
# Promoter Tfit bidirectionals	716
# Intronic Tfit bidirectionals	1301
# Intergenic Tfit bidirectionals	230
Total # dREG bidirectionals	2103
# Promoter dREG bidirectionals	381
# Intronic dREG bidirectionals	699
# Intergenic dREG bidirectionals	683
Part of Tfit master merge?	False
Part of dREG master merge?	False