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SRR2634648 Sample ID 2009
| Paper identifier | Orioli2016human |
| SRP accession | SRP064802 |
| GEO accession | GSE73929 |
| Samples | SRR2634648 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | EU-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | IMR90 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -5 hr | 0 hr | 5 hr |
| Pipeline info and software versions | |
| Sample notes | neusRNA-seq small tRNA incorporate EU |
| Analysis notes | Unstranded, some quite sparse due to adapter/other contamination, did not map well, but force trimming did not help |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 101 |
| Read depth after trimming | 10,340,012 |
| Duplication proportion | 0.98688 |
| Proportion reads mapped | 0.3133 |
| Exon/intron ratio | 0.5 |
| Unique read proportion | 0.00785 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | 86 |
| # Promoter dREG bidirectionals | 18 |
| # Intronic dREG bidirectionals | 23 |
| # Intergenic dREG bidirectionals | 21 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |