DBNascent | Samples

SRR2724029 Sample ID 894

**Data sources**
Paper identifier	Gibson2016chemical
SRP accession	SRP064970
GEO accession	GSE74142
Samples	SRR2724029

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	70 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	711 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype	shRNA luciferase (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	43
Read depth after trimming	16,062,738
Duplication proportion	0.28684
Proportion reads mapped	0.8801
Exon/intron ratio	1.90991
Unique read proportion	0.73545

**Bidirectionals**
Total # Tfit bidirectionals	23575
# Promoter Tfit bidirectionals	8997
# Intronic Tfit bidirectionals	10252
# Intergenic Tfit bidirectionals	4215
Total # dREG bidirectionals	16472
# Promoter dREG bidirectionals	7747
# Intronic dREG bidirectionals	6158
# Intergenic dREG bidirectionals	3005
Part of Tfit master merge?	True
Part of dREG master merge?	True