DBNascent | Samples

SRR2724031 Sample ID 896

**Data sources**
Paper identifier	Gibson2016chemical
SRP accession	SRP064970
GEO accession	GSE74142
Samples	SRR2724031

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	64 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	841 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype	shRNA Parp1 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	43
Read depth after trimming	24,207,709
Duplication proportion	0.38407
Proportion reads mapped	0.5813
Exon/intron ratio	2.67227
Unique read proportion	0.64104

**Bidirectionals**
Total # Tfit bidirectionals	27005
# Promoter Tfit bidirectionals	11418
# Intronic Tfit bidirectionals	11104
# Intergenic Tfit bidirectionals	4655
Total # dREG bidirectionals	19438
# Promoter dREG bidirectionals	9106
# Intronic dREG bidirectionals	7420
# Intergenic dREG bidirectionals	3360
Part of Tfit master merge?	True
Part of dREG master merge?	True