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SRR2724032 Sample ID 897
| Paper identifier | Gibson2016chemical |
| SRP accession | SRP064970 |
| GEO accession | GSE74142 |
| Samples | SRR2724032 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | shRNA Parp1 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | ethanol | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 43 |
| Read depth after trimming | 23,357,144 |
| Duplication proportion | 0.37671 |
| Proportion reads mapped | 0.6137 |
| Exon/intron ratio | 2.76221 |
| Unique read proportion | 0.64278 |
| Total # Tfit bidirectionals | 27301 |
| # Promoter Tfit bidirectionals | 11557 |
| # Intronic Tfit bidirectionals | 11101 |
| # Intergenic Tfit bidirectionals | 4792 |
| Total # dREG bidirectionals | 19669 |
| # Promoter dREG bidirectionals | 9184 |
| # Intronic dREG bidirectionals | 7408 |
| # Intergenic dREG bidirectionals | 3506 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |