DBNascent | Samples

SRR3051599 Sample ID 402

**Data sources**
Paper identifier	Busslinger2017cohesin
SRP accession	SRP067744
GEO accession	GSE76303
Samples	SRR3051599

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	52 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	709 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain	C57BL/6
Genotype	tamoxifen-inducible Cre/+
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	18
Read depth after trimming	15,451,726
Duplication proportion	0.34991
Proportion reads mapped	0.7557
Exon/intron ratio	2.63908
Unique read proportion	0.67453

**Bidirectionals**
Total # Tfit bidirectionals	24014
# Promoter Tfit bidirectionals	8885
# Intronic Tfit bidirectionals	9254
# Intergenic Tfit bidirectionals	3991
Total # dREG bidirectionals	16346
# Promoter dREG bidirectionals	7053
# Intronic dREG bidirectionals	5858
# Intergenic dREG bidirectionals	2330
Part of Tfit master merge?	True
Part of dREG master merge?	True