DBNascent | Samples

SRR3051600 Sample ID 403

**Data sources**
Paper identifier	Busslinger2017cohesin
SRP accession	SRP067744
GEO accession	GSE76303
Samples	SRR3051600

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	79 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	767 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain	C57BL/6
Genotype	tamoxifen-inducible Cre/+
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	hydroxytamoxifen	-300 hr	-240 hr	60 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	18
Read depth after trimming	28,235,660
Duplication proportion	0.37837
Proportion reads mapped	0.7144
Exon/intron ratio	2.26621
Unique read proportion	0.6989

**Bidirectionals**
Total # Tfit bidirectionals	23090
# Promoter Tfit bidirectionals	9251
# Intronic Tfit bidirectionals	8069
# Intergenic Tfit bidirectionals	3971
Total # dREG bidirectionals	17665
# Promoter dREG bidirectionals	6956
# Intronic dREG bidirectionals	6447
# Intergenic dREG bidirectionals	2750
Part of Tfit master merge?	True
Part of dREG master merge?	True