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SRR3051600 Sample ID 403
| Paper identifier | Busslinger2017cohesin |
| SRP accession | SRP067744 |
| GEO accession | GSE76303 |
| Samples | SRR3051600 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 79 Mb |
| Stranded gene read counts | TXT file | 919 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 767 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MEF |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | tamoxifen-inducible Cre/+ |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hydroxytamoxifen | -300 hr | -240 hr | 60 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 18 |
| Read depth after trimming | 28,235,660 |
| Duplication proportion | 0.37837 |
| Proportion reads mapped | 0.7144 |
| Exon/intron ratio | 2.26621 |
| Unique read proportion | 0.6989 |
| Total # Tfit bidirectionals | 23090 |
| # Promoter Tfit bidirectionals | 9251 |
| # Intronic Tfit bidirectionals | 8069 |
| # Intergenic Tfit bidirectionals | 3971 |
| Total # dREG bidirectionals | 17665 |
| # Promoter dREG bidirectionals | 6956 |
| # Intronic dREG bidirectionals | 6447 |
| # Intergenic dREG bidirectionals | 2750 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |