DBNascent | Samples

SRR3051601 Sample ID 404

**Data sources**
Paper identifier	Busslinger2017cohesin
SRP	SRP067744
Samples	SRR3051601

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	100 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	18
Read depth after trimming	27,271,477
Duplication proportion	0.38642
Proportion reads mapped	0.9482
Exon/intron ratio	1.95085
Unique read proportion	0.76038

**Bidirectionals**
Total # Tfit bidirectionals	39766
# Promoter Tfit bidirectionals	11204
# Intronic Tfit bidirectionals	13473
# Intergenic Tfit bidirectionals	12498
Total # dREG bidirectionals	30450
# Promoter dREG bidirectionals	8568
# Intronic dREG bidirectionals	12542
# Intergenic dREG bidirectionals	7845
Part of Tfit master merge?	True
Part of dREG master merge?	True