DBNascent | Samples

SRR3090583 Sample ID 2685

**Data sources**
Paper identifier	Wu2017indentifying
SRP accession	SRP068191
GEO accession	GSE76624
Samples	SRR3090583

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	76 Mb
Stranded gene read counts	TXT file	929 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	623 Kb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	C2C12
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	5
Raw read length	76
Read depth after trimming	161,925,255
Duplication proportion	0.92837
Proportion reads mapped	0.8209
Exon/intron ratio	9.8632
Unique read proportion	0.25568

**Bidirectionals**
Total # Tfit bidirectionals	7280
# Promoter Tfit bidirectionals	1118
# Intronic Tfit bidirectionals	4306
# Intergenic Tfit bidirectionals	730
Total # dREG bidirectionals	25075
# Promoter dREG bidirectionals	1872
# Intronic dREG bidirectionals	17442
# Intergenic dREG bidirectionals	2767
Part of Tfit master merge?	True
Part of dREG master merge?	True