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SRR3189211 Sample ID 634
| Paper identifier | Duarte2016transcription |
| SRP accession | SRP069335 |
| GEO accession | GSE77607 |
| Samples | SRR3189211 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 53 Mb |
| Stranded gene read counts | TXT file | 727 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | heat shock (initially 48 Celsius) | -30 s | 0 s | 30 s |
| Pipeline info and software versions | |
| Sample notes | Heat shock was media added at 48C but incubated at 37C for treatment time |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 30,422,904 |
| Duplication proportion | 0.761 |
| Proportion reads mapped | 0.6475 |
| Exon/intron ratio | 3.91502 |
| Unique read proportion | 0.28966 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |