DBNascent | Samples

SRR3194602 Sample ID 2002

**Data sources**
Paper identifier	Oittinen2017polycomb
SRP accession	SRP070950
GEO accession	GSE78761
Samples	SRR3194602

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	103 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	927 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	intestinal organoid
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch replicate (two mice from same litter)
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	44,270,423
Duplication proportion	0.52475
Proportion reads mapped	0.8264
Exon/intron ratio	3.43001
Unique read proportion	0.54651

**Bidirectionals**
Total # Tfit bidirectionals	22862
# Promoter Tfit bidirectionals	8860
# Intronic Tfit bidirectionals	7501
# Intergenic Tfit bidirectionals	4824
Total # dREG bidirectionals	21330
# Promoter dREG bidirectionals	6291
# Intronic dREG bidirectionals	8071
# Intergenic dREG bidirectionals	4901
Part of Tfit master merge?	True
Part of dREG master merge?	True