DBNascent | Samples

SRR3194603 Sample ID 2002

**Data sources**
Paper identifier	Oittinen2017polycomb
SRP	SRP070950
Samples	SRR3194603

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	112 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	984 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	intestinal organoid
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	enterocyte differentiation protocol	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch replicate (two mice from same litter)
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	45,220,733
Duplication proportion	0.49601
Proportion reads mapped	0.8238
Exon/intron ratio	3.44566
Unique read proportion	0.59203

**Bidirectionals**
Total # Tfit bidirectionals	22647
# Promoter Tfit bidirectionals	7583
# Intronic Tfit bidirectionals	7400
# Intergenic Tfit bidirectionals	5769
Total # dREG bidirectionals	22678
# Promoter dREG bidirectionals	6368
# Intronic dREG bidirectionals	8928
# Intergenic dREG bidirectionals	5539
Part of Tfit master merge?	True
Part of dREG master merge?	True