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SRR3194603 Sample ID 2003
| Paper identifier | Oittinen2017polycomb |
| SRP accession | SRP070950 |
| GEO accession | GSE78761 |
| Samples | SRR3194603 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 112 Mb |
| Stranded gene read counts | TXT file | 922 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 984 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | intestinal organoid |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | enterocyte differentiation protocol | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Batch replicate (two mice from same litter) |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 45,220,733 |
| Duplication proportion | 0.49601 |
| Proportion reads mapped | 0.8238 |
| Exon/intron ratio | 3.44566 |
| Unique read proportion | 0.59203 |
| Total # Tfit bidirectionals | 22647 |
| # Promoter Tfit bidirectionals | 7583 |
| # Intronic Tfit bidirectionals | 7400 |
| # Intergenic Tfit bidirectionals | 5769 |
| Total # dREG bidirectionals | 22678 |
| # Promoter dREG bidirectionals | 6368 |
| # Intronic dREG bidirectionals | 8928 |
| # Intergenic dREG bidirectionals | 5539 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |