DBNascent | Samples

SRR3194604 Sample ID 2004

**Data sources**
Paper identifier	Oittinen2017polycomb
SRP accession	SRP070950
GEO accession	GSE78761
Samples	SRR3194604

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	48 Mb
Stranded gene read counts	TXT file	912 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	483 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	intestinal organoid
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch replicate (two mice from same litter)
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	20,787,993
Duplication proportion	0.58152
Proportion reads mapped	0.7669
Exon/intron ratio	2.4797
Unique read proportion	0.43819

**Bidirectionals**
Total # Tfit bidirectionals	14852
# Promoter Tfit bidirectionals	5666
# Intronic Tfit bidirectionals	5052
# Intergenic Tfit bidirectionals	2549
Total # dREG bidirectionals	11227
# Promoter dREG bidirectionals	5220
# Intronic dREG bidirectionals	3058
# Intergenic dREG bidirectionals	1887
Part of Tfit master merge?	True
Part of dREG master merge?	True