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SRR3194605 Sample ID 2005
| Paper identifier | Oittinen2017polycomb |
| SRP accession | SRP070950 |
| GEO accession | GSE78761 |
| Samples | SRR3194605 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 25 Mb |
| Stranded gene read counts | TXT file | 908 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 452 Kb |
| dREG bidirectional regions | BED file | 131 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | intestinal organoid |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | enterocyte differentiation protocol | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Batch replicate (two mice from same litter) |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 12,896,470 |
| Duplication proportion | 0.79478 |
| Proportion reads mapped | 0.7884 |
| Exon/intron ratio | 2.88073 |
| Unique read proportion | 0.21098 |
| Total # Tfit bidirectionals | 5237 |
| # Promoter Tfit bidirectionals | 1286 |
| # Intronic Tfit bidirectionals | 2189 |
| # Intergenic Tfit bidirectionals | 936 |
| Total # dREG bidirectionals | 3046 |
| # Promoter dREG bidirectionals | 1083 |
| # Intronic dREG bidirectionals | 1222 |
| # Intergenic dREG bidirectionals | 598 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |