DBNascent | Samples

SRR3194605 Sample ID 2005

**Data sources**
Paper identifier	Oittinen2017polycomb
SRP accession	SRP070950
GEO accession	GSE78761
Samples	SRR3194605

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	25 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	452 Kb
dREG bidirectional regions	BED file	131 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	intestinal organoid
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	enterocyte differentiation protocol	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Batch replicate (two mice from same litter)
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	12,896,470
Duplication proportion	0.79478
Proportion reads mapped	0.7884
Exon/intron ratio	2.88073
Unique read proportion	0.21098

**Bidirectionals**
Total # Tfit bidirectionals	5237
# Promoter Tfit bidirectionals	1286
# Intronic Tfit bidirectionals	2189
# Intergenic Tfit bidirectionals	936
Total # dREG bidirectionals	3046
# Promoter dREG bidirectionals	1083
# Intronic dREG bidirectionals	1222
# Intergenic dREG bidirectionals	598
Part of Tfit master merge?	True
Part of dREG master merge?	True