DBNascent | Samples

SRR3309664 Sample ID 961

**Data sources**
Paper identifier	Hong2017dissociation
SRP	SRP072516
Samples	SRR3309664

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	222 Mb
Stranded gene read counts	TXT file	933 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	quadriceps muscle
Clone/Individual
Strain	C57BL/6
Genotype	Hdac3 fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	50
Read depth after trimming	131,772,372
Duplication proportion	0.49634
Proportion reads mapped	0.5448
Exon/intron ratio	3.69164
Unique read proportion	0.65126

**Bidirectionals**
Total # Tfit bidirectionals	38500
# Promoter Tfit bidirectionals	14018
# Intronic Tfit bidirectionals	11637
# Intergenic Tfit bidirectionals	10602
Total # dREG bidirectionals	43640
# Promoter dREG bidirectionals	9802
# Intronic dREG bidirectionals	18938
# Intergenic dREG bidirectionals	12003
Part of Tfit master merge?	True
Part of dREG master merge?	True