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SRR3309664 Sample ID 961
| Paper identifier | Hong2017dissociation |
| SRP accession | SRP072516 |
| GEO accession | GSE79696 |
| Samples | SRR3309664 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 222 Mb |
| Stranded gene read counts | TXT file | 933 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | quadriceps muscle |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Hdac3 fl/fl |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 131,772,372 |
| Duplication proportion | 0.49634 |
| Proportion reads mapped | 0.5448 |
| Exon/intron ratio | 3.69164 |
| Unique read proportion | 0.65126 |
| Total # Tfit bidirectionals | 38500 |
| # Promoter Tfit bidirectionals | 14018 |
| # Intronic Tfit bidirectionals | 11637 |
| # Intergenic Tfit bidirectionals | 10602 |
| Total # dREG bidirectionals | 43640 |
| # Promoter dREG bidirectionals | 9802 |
| # Intronic dREG bidirectionals | 18938 |
| # Intergenic dREG bidirectionals | 12003 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |