DBNascent | Samples

SRR3309665 Sample ID 962

**Data sources**
Paper identifier	Hong2017dissociation
SRP accession	SRP072516
GEO accession	GSE79696
Samples	SRR3309665

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	255 Mb
Stranded gene read counts	TXT file	935 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	quadriceps muscle
Clone/Individual
Strain	C57BL/6
Genotype	Hdac3 fl/fl; Myl1-Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	139,980,033
Duplication proportion	0.51889
Proportion reads mapped	0.6052
Exon/intron ratio	3.65336
Unique read proportion	0.6929

**Bidirectionals**
Total # Tfit bidirectionals	37782
# Promoter Tfit bidirectionals	13928
# Intronic Tfit bidirectionals	11141
# Intergenic Tfit bidirectionals	10488
Total # dREG bidirectionals	44656
# Promoter dREG bidirectionals	9901
# Intronic dREG bidirectionals	19715
# Intergenic dREG bidirectionals	12390
Part of Tfit master merge?	True
Part of dREG master merge?	True