DBNascent | Samples

SRR3313818 Sample ID 2409

**Data sources**
Paper identifier	Sun2017enhancer
SRP	SRP072574
Samples	SRR3313818

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	256 Mb
Stranded gene read counts	TXT file	935 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	quadriceps muscle
Clone/Individual
Strain	C57BL/6
Genotype
Construct	Hdac3 -/-

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	4 month old mice
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	139,980,033
Duplication proportion	0.51889
Proportion reads mapped	0.6052
Exon/intron ratio	3.65311
Unique read proportion	0.69345

**Bidirectionals**
Total # Tfit bidirectionals	37792
# Promoter Tfit bidirectionals	13905
# Intronic Tfit bidirectionals	11203
# Intergenic Tfit bidirectionals	10415
Total # dREG bidirectionals	44744
# Promoter dREG bidirectionals	9931
# Intronic dREG bidirectionals	19726
# Intergenic dREG bidirectionals	12435
Part of Tfit master merge?	True
Part of dREG master merge?	True