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SRR3313819 Sample ID 2410
| Paper identifier | Sun2017enhancer |
| SRP | SRP072574 |
| Samples | SRR3313819 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | single |
| Timecourse | False |
| Control/Experimental | experimental |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 233 Mb |
| Stranded gene read counts | TXT file | 934 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | quadriceps muscle |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | treadmill exercise (10 m/min) | -3 hr | -2 hr | 1 hr |
| treatment | treadmill exercise (10 m/min) | -5 hr | -4 hr | 1 hr |
| treatment | treadmill exercise (10 m/min) | -7 hr | -6 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | 4 month old mice |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 130,916,929 |
| Duplication proportion | 0.49991 |
| Proportion reads mapped | 0.581 |
| Exon/intron ratio | 3.78074 |
| Unique read proportion | 0.67064 |
| Total # Tfit bidirectionals | 38533 |
| # Promoter Tfit bidirectionals | 13643 |
| # Intronic Tfit bidirectionals | 12207 |
| # Intergenic Tfit bidirectionals | 10643 |
| Total # dREG bidirectionals | 45001 |
| # Promoter dREG bidirectionals | 9682 |
| # Intronic dREG bidirectionals | 20129 |
| # Intergenic dREG bidirectionals | 12334 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |