DBNascent | Samples

SRR3313820 Sample ID 2412

**Data sources**
Paper identifier	Sun2017enhancer
SRP accession	SRP072574
GEO accession	GSE79739
Samples	SRR3313820

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	234 Mb
Stranded gene read counts	TXT file	936 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	quadriceps muscle
Clone/Individual
Strain	C57BL/6
Genotype
Construct	Hdac3 -/-

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	treadmill exercise (10 m/min)	-3 hr	-2 hr	1 hr
treatment	treadmill exercise (10 m/min)	-5 hr	-4 hr	1 hr
treatment	treadmill exercise (10 m/min)	-7 hr	-6 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	4 month old mice
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	3
Raw read length	50
Read depth after trimming	123,718,715
Duplication proportion	0.48479
Proportion reads mapped	0.5665
Exon/intron ratio	5.38197
Unique read proportion	0.67754

**Bidirectionals**
Total # Tfit bidirectionals	59179
# Promoter Tfit bidirectionals	13187
# Intronic Tfit bidirectionals	18808
# Intergenic Tfit bidirectionals	23490
Total # dREG bidirectionals	46424
# Promoter dREG bidirectionals	10062
# Intronic dREG bidirectionals	20507
# Intergenic dREG bidirectionals	13316
Part of Tfit master merge?	True
Part of dREG master merge?	True