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SRR3313820 Sample ID 2412
| Paper identifier | Sun2017enhancer |
| SRP accession | SRP072574 |
| GEO accession | GSE79739 |
| Samples | SRR3313820 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 234 Mb |
| Stranded gene read counts | TXT file | 936 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 5 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | quadriceps muscle |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct | Hdac3 -/- |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | treadmill exercise (10 m/min) | -3 hr | -2 hr | 1 hr |
| treatment | treadmill exercise (10 m/min) | -5 hr | -4 hr | 1 hr |
| treatment | treadmill exercise (10 m/min) | -7 hr | -6 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | 4 month old mice |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 123,718,715 |
| Duplication proportion | 0.48479 |
| Proportion reads mapped | 0.5665 |
| Exon/intron ratio | 5.38197 |
| Unique read proportion | 0.67754 |
| Total # Tfit bidirectionals | 59179 |
| # Promoter Tfit bidirectionals | 13187 |
| # Intronic Tfit bidirectionals | 18808 |
| # Intergenic Tfit bidirectionals | 23490 |
| Total # dREG bidirectionals | 46424 |
| # Promoter dREG bidirectionals | 10062 |
| # Intronic dREG bidirectionals | 20507 |
| # Intergenic dREG bidirectionals | 13316 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |