DBNascent | Samples

SRR3317157 Sample ID 1603

**Data sources**
Paper identifier	Liu2013brd4
SRP accession	SRP031885
GEO accession	GSE51633
Samples	SRR3317157

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	107 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	574 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct	siRNA JMJD6

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	siRNA JMJD6 #2
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	36
Read depth after trimming	28,035,857
Duplication proportion	0.28864
Proportion reads mapped	0.8399
Exon/intron ratio	1.94479
Unique read proportion	0.75685

**Bidirectionals**
Total # Tfit bidirectionals	20378
# Promoter Tfit bidirectionals	8316
# Intronic Tfit bidirectionals	8789
# Intergenic Tfit bidirectionals	2628
Total # dREG bidirectionals	13270
# Promoter dREG bidirectionals	5832
# Intronic dREG bidirectionals	4928
# Intergenic dREG bidirectionals	2352
Part of Tfit master merge?	True
Part of dREG master merge?	True