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SRR3317157 Sample ID 1603
| Paper identifier | Liu2013brd4 |
| SRP accession | SRP031885 |
| GEO accession | GSE51633 |
| Samples | SRR3317157 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 107 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 574 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA JMJD6 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | siRNA JMJD6 #2 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 36 |
| Read depth after trimming | 28,035,857 |
| Duplication proportion | 0.28864 |
| Proportion reads mapped | 0.8399 |
| Exon/intron ratio | 1.94479 |
| Unique read proportion | 0.75685 |
| Total # Tfit bidirectionals | 20378 |
| # Promoter Tfit bidirectionals | 8316 |
| # Intronic Tfit bidirectionals | 8789 |
| # Intergenic Tfit bidirectionals | 2628 |
| Total # dREG bidirectionals | 13270 |
| # Promoter dREG bidirectionals | 5832 |
| # Intronic dREG bidirectionals | 4928 |
| # Intergenic dREG bidirectionals | 2352 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |