DBNascent | Samples

SRR3317158 Sample ID 1604

**Data sources**
Paper identifier	Liu2013brd4
SRP accession	SRP031885
GEO accession	GSE51633
Samples	SRR3317158

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	46 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	238 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T
Clone/Individual
Strain
Genotype
Construct	siRNA Brd4

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	siRNA Brd4 #1
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	36
Read depth after trimming	10,331,214
Duplication proportion	0.25604
Proportion reads mapped	0.7381
Exon/intron ratio	1.59281
Unique read proportion	0.72508

**Bidirectionals**
Total # Tfit bidirectionals	14680
# Promoter Tfit bidirectionals	5085
# Intronic Tfit bidirectionals	7641
# Intergenic Tfit bidirectionals	1474
Total # dREG bidirectionals	5513
# Promoter dREG bidirectionals	2507
# Intronic dREG bidirectionals	2189
# Intergenic dREG bidirectionals	960
Part of Tfit master merge?	True
Part of dREG master merge?	True